Items where Author is "Preiss, Thomas"

Article

Ortiz-Barahona, Vanessa and Soler, Marta and Davalos, Veronica and García-Prieto, Carlos A. and Janin, Maxime and Setien, Fernando and Fernández-Rebollo, Irene and Bech-Serra, Joan J. and De La Torre, Carolina and Guil, Sonia and Villanueva, Alberto and Zhang, Pei-Hong and Yang, Li and Guarnacci, Marco and Schumann, Ulrike and Preiss, Thomas and Balaseviciute, Ugne and Montal, Robert and Llovet, Josep M. and Esteller, Manel (2023) Epigenetic inactivation of the 5-methylcytosine RNA methyltransferase NSUN7 is associated with clinical outcome and therapeutic vulnerability in liver cancer. Molecular Cancer, 22 (1). ISSN 1476-4598

Wagner, Susan and Bohlen, Jonathan and Herrmannova, Anna and Jelínek, Jan and Preiss, Thomas and Valášek, Leoš Shivaya and Teleman, Aurelio A. (2022) Selective footprinting of 40S and 80S ribosome subpopulations (Sel-TCP-seq) to study translation and its control. Nature Protocols, 17 (10). pp.2139-2187. ISSN 1754-2189

Sibbritt, Tennille and Schumann, Ulrike and Shafik, Andrew and Guarnacci, Marco and Clark, Susan J. and Preiss, Thomas (2022) Target-Specific Profiling of RNA m5C Methylation Level Using Amplicon Sequencing. Methods Mol Biol, 2404. pp.375-392. ISSN 1064-3745

Hayashi, Junna and Ton, Jennifer and Negi, Sparsh and Stephens, Daniel E. K. M. and Pountney, Dean L. and Preiss, Thomas and Carver, John A. (2021) The Effect of Oxidized Dopamine on the Structure and Molecular Chaperone Function of the Small Heat-Shock Proteins, αB-Crystallin and Hsp27. International Journal of Molecular Sciences, 22 (7). p. 3700. ISSN 1422-0067

Janapala, Yoshika and Woodward, Katrina and Lee, Jiwon and Rug, Melanie and Preiss, Thomas and Shirokikh, Nikolay E. (2021) Rapid In Vivo Fixation and Isolation of Translational Complexes from Eukaryotic Cells. Journal of Visualized Experiments (178). ISSN 1940-087X

Wagner, Susan and Herrmannová, Anna and Hronová, Vladislava and Gunišová, Stanislava and Sen, Neelam D. and Hannan, Ross D. and Hinnebusch, Alan G. and Shirokikh, Nikolay E. and Preiss, Thomas and Valášek, Leoš Shivaya (2020) Selective Translation Complex Profiling Reveals Staged Initiation and Co-translational Assembly of Initiation Factor Complexes. Molecular Cell. ISSN 10972765

Schumann, Ulrike and Zhang, He-Na and Sibbritt, Tennille and Pan, Anyu and Horvath, Attila and Gross, Simon and Clark, Susan J. and Yang, Li and Preiss, Thomas (2020) Multiple links between 5-methylcytosine content of mRNA and translation. BMC Biology, 18 (1). ISSN 1741-7007

Ragan, Chikako and Goodall, Gregory J and Shirokikh, Nikolay E and Preiss, Thomas (2019) Insights into the biogenesis and potential functions of exonic circular RNA. Scientific Reports, 9 (1). p. 2048. ISSN 2045-2322 (N/A)

Janapala, Yoshika and Preiss, Thomas and Shirokikh, Nikolay E. (2019) Control of Translation at the Initiation Phase During Glucose Starvation in Yeast. International Journal of Molecular Sciences, 20 (16). p. 4043. ISSN 1422-0067

Janin, Maxime and Ortiz-Barahona, Vanessa and de Moura, Manuel Castro and Martínez-Cardús, Anna and Llinàs-Arias, Pere and Soler, Marta and Nachmani, Daphna and Pelletier, Joffrey and Schumann, Ulrike and Calleja-Cervantes, Maria E. and Moran, Sebastian and Guil, Sonia and Bueno-Costa, Alberto and Piñeyro, David and Perez-Salvia, Montserrat and Rosselló-Tortella, Margalida and Piqué, Laia and Bech-Serra, Joan J. and De La Torre, Carolina and Vidal, August and Martínez-Iniesta, María and Martín-Tejera, Juan F. and Villanueva, Alberto and Arias, Alexandra and Cuartas, Isabel and Aransay, Ana M. and La Madrid, Andres Morales and Carcaboso, Angel M. and Santa-Maria, Vicente and Mora, Jaume and Fernandez, Agustin F. and Fraga, Mario F. and Aldecoa, Iban and Pedrosa, Leire and Graus, Francesc and Vidal, Noemi and Martínez-Soler, Fina and Tortosa, Avelina and Carrato, Cristina and Balañá, Carme and Boudreau, Matthew W. and Hergenrother, Paul J. and Kötter, Peter and Entian, Karl-Dieter and Hench, Jürgen and Frank, Stephan and Mansouri, Sheila and Zadeh, Gelareh and Dans, Pablo D. and Orozco, Modesto and Thomas, George and Blanco, Sandra and Seoane, Joan and Preiss, Thomas and Pandolfi, Pier Paolo and Esteller, Manel (2019) Epigenetic loss of RNA-methyltransferase NSUN5 in glioma targets ribosomes to drive a stress adaptive translational program. Acta Neuropathologica. ISSN 0001-6322

Sen, Neelam Dabas and Gupta, Neha and K. Archer, Stuart and Preiss, Thomas and Lorsch, Jon R and Hinnebusch, Alan G (2019) Functional interplay between DEAD-box RNA helicases Ded1 and Dbp1 in preinitiation complex attachment and scanning on structured mRNAs in vivo. Nucleic Acids Research. ISSN 0305-1048

Shirokikh, Nikolay E. and Dutikova, Yulia S. and Staroverova, Maria A. and Hannan, Ross D. and Preiss, Thomas (2019) Migration of Small Ribosomal Subunits on the 5′ Untranslated Regions of Capped Messenger RNA. International Journal of Molecular Sciences, 20 (18). p. 4464. ISSN 1422-0067

Swaminathan, Angavai and Harrison, Paul F. and Preiss, Thomas and Beilharz, Traude H. (2019) PAT-Seq: A Method for Simultaneous Quantitation of Gene Expression, Poly(A)-Site Selection and Poly(A)-Length Distribution in Yeast Transcriptomes. Methods in Molecular Biology, 2049. pp.141-164. ISSN 1940-6029 (Book Chapter)

Shirokikh, Nikolay E. and Preiss, Thomas (2018) Translation initiation by cap-dependent ribosome recruitment: Recent insights and open questions. Wiley Interdisciplinary Reviews: RNA, ePub. pp. e1473. ISSN 17577004 (N/A)

Rasko, John E J and Preiss, Thomas (2018) Diversity of transcripts emanating from protein-coding genes. Seminars in Cell & Developmental Biology, 75. pp.1-2. ISSN 10849521 (N/A)

Hentze, Matthias W and Castello, Alfredo and Schwarzl, Thomas and Preiss, Thomas (2018) A brave new world of RNA-binding proteins. Nature Reviews Molecular Cell Biology, ePub. ISSN 1471-0072 (N/A)

Shirokikh, Nikolay E and Archer, Stuart K and Beilharz, Traude H and Powell, David and Preiss, Thomas (2017) Translation complex profile sequencing to study the in vivo dynamics of mRNA-ribosome interactions during translation initiation, elongation and termination. Nature Protocols, 12 (4). pp.697-731. ISSN 1750-2799 (N/A)

David, Rakesh and Burgess, Alice and Parker, Brian and Li, Jun and Pulsford, Kalinya and Sibbritt, Tennille and Preiss, Thomas and Searle, Iain Robert (2017) Transcriptome-Wide Mapping of RNA 5-Methylcytosine in Arabidopsis mRNAs and Noncoding RNAs. The Plant Cell, 29 (3). pp.445-460. ISSN 1040-4651 (OA Not Required)

Sibbritt, Tennille and Shafik, Andrew and Clark, Susan J and Preiss, Thomas (2016) Nucleotide-Level Profiling of m⁵C RNA Methylation. Methods in Molecular Biology, 1358. pp.269-84. ISSN 1940-6029 (Book Chapter)

Liao, Yalin and Castello, Alfredo and Fischer, Bernd and Leicht, Stefan and Föehr, Sophia and Frese, Christian K and Ragan, Chikako and Kurscheid, Sebastian and Pagler, Eloisa and Yang, Hao and Krijgsveld, Jeroen and Hentze, Matthias W and Preiss, Thomas (2016) The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease. Cell Reports, 16 (5). pp.1456-69. ISSN 2211-1247 (OA)

Liepelt, Anke and Naarmann-de Vries, Isabel S and Simons, Nadine and Eichelbaum, Katrin and Föhr, Sophia and Archer, Stuart K and Castello, Alfredo and Usadel, Björn and Krijgsveld, Jeroen and Preiss, Thomas and Marx, Gernot and Hentze, Matthias W and Ostareck, Dirk H and Ostareck-Lederer, Antje (2016) Identification of RNA-binding Proteins in Macrophages by Interactome Capture. Molecular & Cellular Proteomics, 15 (8). pp.2699-714. ISSN 1535-9484 (OA)

Archer, Stuart K and Shirokikh, Nikolay E and Beilharz, Traude H and Preiss, Thomas (2016) Dynamics of ribosome scanning and recycling revealed by translation complex profiling. Nature, 535. pp.570-574. ISSN 1476-4687 (N/A)

Schumann, Ulrike and Shafik, Andrew and Preiss, Thomas (2016) METTL3 Gains R/W Access to the Epitranscriptome. Molecular Cell, 62 (3). pp.323-4. ISSN 1097-4164 (N/A)

Soetanto, Rina and Hynes, Carly J and Patel, Hardip R and Humphreys, David T and Evers, Maurits and Duan, Guowen and Parker, Brian J and Archer, Stuart K and Clancy, Jennifer L and Graham, Robert M and Beilharz, Traude H and Smith, Nicola J and Preiss, Thomas (2016) Role of miRNAs and alternative mRNA 3'-end cleavage and polyadenylation of their mRNA targets in cardiomyocyte hypertrophy. Biochimica et Biophysica Acta, 1859 (5). pp.744-756. ISSN 0006-3002 (PP OA)

Preiss, Thomas (2016) All Ribosomes Are Created Equal. Really? Trends in Biochemical Sciences, 41 (2). pp.121-3. ISSN 0968-0004 (N/A)

Wong, Queenie Wing-Lei and Vaz, Candida and Lee, Qian Yi and Zhao, Tian Yun and Luo, Raymond and Archer, Stuart K and Preiss, Thomas and Tanavde, Vivek and Vardy, Leah A (2016) Embryonic Stem Cells Exhibit mRNA Isoform Specific Translational Regulation. PloS One, 11 (1). pp. e0143235. ISSN 1932-6203 (Gold OA)

Shafik, Andrew and Schumann, Ulrike and Evers, Maurits and Sibbritt, Tennille and Preiss, Thomas (2016) The emerging epitranscriptomics of long noncoding RNAs. Biochimica et Biophysica Acta, 1859 (1). pp.59-70. ISSN 0006-3002 (N/A)

Castello, Alfredo and Hentze, Matthias W and Preiss, Thomas (2015) Metabolic Enzymes Enjoying New Partnerships as RNA-Binding Proteins. Trends in Endocrinology and Metabolism, 26 (12). pp.746-57. ISSN 1879-3061 (OA)

Harrison, Paul F and Powell, David R and Clancy, Jennifer L and Preiss, Thomas and Boag, Peter R and Traven, Ana and Seemann, Torsten and Beilharz, Traude H (2015) PAT-seq: a method to study the integration of 3'-UTR dynamics with gene expression in the eukaryotic transcriptome. RNA, 21 (8). pp.1502-10. ISSN 1469-9001 (OA)

Fu, Nai Yang and Rios, Anne C and Pal, Bhupinder and Soetanto, Rina and Lun, Aaron T L and Liu, Kevin and Beck, Tamara and Best, Sarah A and Vaillant, François and Bouillet, Philippe and Strasser, Andreas and Preiss, Thomas and Smyth, Gordon K and Lindeman, Geoffrey J and Visvader, Jane E (2015) EGF-mediated induction of Mcl-1 at the switch to lactation is essential for alveolar cell survival. Nature Cell Biology, 17 (4). pp.365-75. ISSN 1476-4679 (N/A)

Archer, Stuart K and Shirokikh, Nikolay E and Hallwirth, Claus V and Beilharz, Traude H and Preiss, Thomas (2015) Probing the closed-loop model of mRNA translation in living cells. RNA Biology, 12 (3). pp.248-54. ISSN 1555-8584 (OA)

Srivastava, Monika and Duan, Guowen and Kershaw, Nadia J and Athanasopoulos, Vicki and Yeo, Janet H C and Ose, Toyoyuki and Hu, Desheng and Brown, Simon H J and Jergic, Slobodan and Patel, Hardip R and Pratama, Alvin and Richards, Sashika and Verma, Anil and Jones, E Yvonne and Heissmeyer, Vigo and Preiss, Thomas and Dixon, Nicholas E and Chong, Mark M W and Babon, Jeffrey J and Vinuesa, Carola G (2015) Roquin binds microRNA-146a and Argonaute2 to regulate microRNA homeostasis. Nature Communications, 6. p. 6253. ISSN 2041-1723 (OA)

Tonge, Peter D and Corso, Andrew J and Monetti, Claudio and Hussein, Samer M I and Puri, Mira C and Michael, Iacovos P and Li, Mira and Lee, Dong-Sung and Mar, Jessica C and Cloonan, Nicole and Wood, David L and Gauthier, Maely E and Korn, Othmar and Clancy, Jennifer L and Preiss, Thomas and Grimmond, Sean M and Shin, Jong-Yeon and Seo, Jeong-Sun and Wells, Christine A and Rogers, Ian M and Nagy, Andras (2014) Divergent reprogramming routes lead to alternative stem-cell states. Nature, 516 (7530). pp.192-7. ISSN 1476-4687 (Not OA)

Hussein, Samer M I and Puri, Mira C and Tonge, Peter D and Benevento, Marco and Corso, Andrew J and Clancy, Jennifer L and Mosbergen, Rowland and Li, Mira and Lee, Dong-Sung and Cloonan, Nicole and Wood, David L A and Munoz, Javier and Middleton, Robert and Korn, Othmar and Patel, Hardip R and White, Carl A and Shin, Jong-Yeon and Gauthier, Maely E and Lê Cao, Kim-Anh and Kim, Jong-Il and Mar, Jessica C and Shakiba, Nika and Ritchie, William and Rasko, John E J and Grimmond, Sean M and Zandstra, Peter W and Wells, Christine A and Preiss, Thomas and Seo, Jeong-Sun and Heck, Albert J R and Rogers, Ian M and Nagy, Andras (2014) Genome-wide characterization of the routes to pluripotency. Nature, 516 (7530). pp.198-206. ISSN 1476-4687 (N/A)

Keam, Simon P and Young, Paul E and McCorkindale, Alexandra L and Dang, Thurston H Y and Clancy, Jennifer L and Humphreys, David T and Preiss, Thomas and Hutvagner, Gyorgy and Martin, David I K and Cropley, Jennifer E and Suter, Catherine M (2014) The human Piwi protein Hiwi2 associates with tRNA-derived piRNAs in somatic cells. Nucleic Acids Research, 42 (14). pp.8984-95. ISSN 1362-4962 (OA)

Liang, Bo and Soka, Magdalena and Christensen, Alex Horby and Olesen, Morten S and Larsen, Anders P and Knop, Filip K and Wang, Fan and Nielsen, Jonas B and Andersen, Martin N and Humphreys, David T and Mann, Stefan A and Huttner, Inken G and Vandenberg, Jamie I and Svendsen, Jesper H and Haunsø, Stig and Preiss, Thomas and Seebohm, Guiscard and Olesen, Søren-Peter and Schmitt, Nicole and Fatkin, Diane (2014) Genetic variation in the two-pore domain potassium channel, TASK-1, may contribute to an atrial substrate for arrhythmogenesis. Journal of Molecular and Cellular Cardiology, 67. pp.69-76. ISSN 1095-8584 (PP OA)

Clancy, Jennifer L and Patel, Hardip R and Hussein, Samer M I and Tonge, Peter D and Cloonan, Nicole and Corso, Andrew J and Li, Mira and Lee, Dong-Sung and Shin, Jong-Yeon and Wong, Justin J L and Bailey, Charles G and Benevento, Marco and Munoz, Javier and Chuah, Aaron and Wood, David and Rasko, John E J and Heck, Albert J R and Grimmond, Sean M and Rogers, Ian M and Seo, Jeong-Sun and Wells, Christine A and Puri, Mira C and Nagy, Andras and Preiss, Thomas (2014) Small RNA changes en route to distinct cellular states of induced pluripotency. Nature Communications, 5. p. 5522. ISSN 2041-1723 (OA)

Lee, Dong-Sung and Shin, Jong-Yeon and Tonge, Peter D and Puri, Mira C and Lee, Seungbok and Park, Hansoo and Lee, Won-Chul and Hussein, Samer M I and Bleazard, Thomas and Yun, Ji-Young and Kim, Jihye and Li, Mira and Cloonan, Nicole and Wood, David and Clancy, Jennifer L and Mosbergen, Rowland and Yi, Jae-Hyuk and Yang, Kap-Seok and Kim, Hyungtae and Rhee, Hwanseok and Wells, Christine A and Preiss, Thomas and Grimmond, Sean M and Rogers, Ian M and Nagy, Andras and Seo, Jeong-Sun (2014) An epigenomic roadmap to induced pluripotency reveals DNA methylation as a reprogramming modulator. Nature Communications, 5. p. 5619. ISSN 2041-1723 (OA)

Lai, Xianning and Beilharz, Traude and Au, Wei-Chun and Hammet, Andrew and Preiss, Thomas and Basrai, Munira A and Heierhorst, Jörg (2013) Yeast hEST1A/B (SMG5/6)-like proteins contribute to environment-sensing adaptive gene expression responses. G3 (Bethesda, Md.), 3 (10). pp.1649-59. ISSN 2160-1836

Li, Cheryl C Y and Young, Paul E and Maloney, Christopher A and Eaton, Sally A and Cowley, Mark J and Buckland, Michael E and Preiss, Thomas and Henstridge, Darren C and Cooney, Gregory J and Febbraio, Mark A and Martin, David I K and Cropley, Jennifer E and Suter, Catherine M (2013) Maternal obesity and diabetes induces latent metabolic defects and widespread epigenetic changes in isogenic mice. Epigenetics, 8 (6). pp.602-11. ISSN 1559-2308 (PMC OA)

Ohanian, Monique and Humphreys, David T and Anderson, Elizabeth and Preiss, Thomas and Fatkin, Diane (2013) A heterozygous variant in the human cardiac miR-133 gene, MIR133A2, alters miRNA duplex processing and strand abundance. BMC genetics, 14. p. 18. ISSN 1471-2156 (PMC OA)

Castello, Alfredo and Fischer, Bernd and Eichelbaum, Katrin and Horos, Rastislav and Beckmann, Benedikt M and Strein, Claudia and Davey, Norman E and Humphreys, David T and Preiss, Thomas and Steinmetz, Lars M and Krijgsveld, Jeroen and Hentze, Matthias W (2012) Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell, 149 (6). pp.1393-406. ISSN 1097-4172 (OA)

Squires, Jeffrey E and Patel, Hardip R and Nousch, Marco and Sibbritt, Tennille and Humphreys, David T and Parker, Brian J and Suter, Catherine M and Preiss, Thomas (2012) Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA. Nucleic acids research, 40 (11). pp.5023-33. ISSN 1362-4962 (PMC OA)

Humphreys, David T and Hynes, Carly J and Patel, Hardip R and Wei, Grace H and Cannon, Leah and Fatkin, Diane and Suter, Catherine M and Clancy, Jennifer L and Preiss, Thomas (2012) Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function. PloS one, 7 (2). pp. e30933. ISSN 1932-6203 (Gold OA)

Schonrock, Nicole and Humphreys, David T and Preiss, Thomas and Götz, Jürgen (2012) Target gene repression mediated by miRNAs miR-181c and miR-9 both of which are down-regulated by amyloid-β. Journal of Molecular Neuroscience, 46 (2). pp.324-35. ISSN 1559-1166 (Not OA)