Items where Author is "Humphreys, David T"

Article

Lewis, Amy and Humphreys, David T and Pan-Castillo, Belen and Berti, Giulio and Felice, Carla and Gordon, Hannah and Gadhok, Radha and Nijhuis, Anke and Mehta S, Shameer and Eleid, Liliane and Iqbal, Sidra and Armuzzi, Alessandro and Minicozzi, Annamaria and Giannoulatou, Eleni and ChinAleong, Joanne and Feakins, Roger and Sagi-Kiss, Virag and Barisic, Dora and Koufaki, Margarita-Ioanna and Bundy, Jacob G and Lindsay, James O and Silver, Andrew (2024) Epigenetic and Metabolic Reprogramming of Fibroblasts in Crohn’s Disease Strictures Reveals Histone Deacetylases as Therapeutic Targets. Journal of Crohn's and Colitis, 18 (6). pp.895-907. ISSN 1873-9946

Patrick, Ralph and Kirk, Edwin P and Moradi Marjaneh, Mahdi and Alankarage, Dimuthu and Humphreys, David T and Del Monte-Nieto, Gonzalo and Cornejo-Paramo, Paola and Janbandhu, Vaibhao and Doan, Tram B and Dunwoodie, Sally L and Wong, Emily S and Moran, Chris and Martin, Ian CA and Thomson, Peter C and Harvey, Richard P (2023) Quantitative trait and transcriptome analysis of genetic complexity underpinning cardiac interatrial septation in mice using an advanced intercross line. eLife, 12. ISSN 2050-084X

Martin, Ella M M A and Enriquez, Annabelle and Sparrow, Duncan B and Humphreys, David T and McInerney-Leo, Aideen M and Leo, Paul J and Duncan, Emma L and Iyer, Kavitha R and Greasby, Joelene A and Ip, Eddie and Giannoulatou, Eleni and Sheng, Delicia and Wohler, Elizabeth and Dimartino, Clémantine and Amiel, Jeanne and Capri, Yline and Lehalle, Daphné and Mory, Adi and Wilnai, Yael and Lebenthal, Yael and Gharavi, Ali G and Krzemień, Grażyna G and Miklaszewska, Monika and Steiner, Robert D and Raggio, Cathy and Blank, Robert and Baris Feldman, Hagit and Milo Rasouly, Hila and Sobreira, Nara L M and Jobling, Rebekah and Gordon, Christopher T and Giampietro, Philip F and Dunwoodie, Sally L and Chapman, Gavin (2020) Heterozygous loss of WBP11 function causes multiple congenital defects in humans and mice. Human Molecular Genetics, 29 (22). pp.3662-3678. ISSN 0964-6906

Humphreys, David T and Fossat, Nicolas and Demuth, Madeleine and Tam, Patrick P L and Ho, Joshua W K (2019) Ularcirc: visualization and enhanced analysis of circular RNAs via back and canonical forward splicing. Nucleic Acids Research. ISSN 0305-1048

Alankarage, Dimuthu and Ip, Eddie and Szot, Justin O and Munro, Jacob and Blue, Gillian M and Harrison, Katrina and Cuny, Hartmut and Enriquez, Annabelle and Troup, Michael and Humphreys, David T and Wilson, Meredith and Harvey, Richard P and Sholler, Gary F and Graham, Robert M and Ho, Joshua W K and Kirk, Edwin P and Pachter, Nicholas and Chapman, Gavin and Winlaw, David S and Giannoulatou, Eleni and Dunwoodie, Sally L (2018) Identification of clinically actionable variants from genome sequencing of families with congenital heart disease. Genetics in Medicine, ePub. ISSN 1098-3600 (Not OA)

Coleman, James L J and Mouat, Margaret A and Wu, Jianxin and Jancovski, Nikola and Bassi, Jaspreet K and Chan, Andrea Y and Humphreys, David T and Mrad, Nadine and Yu, Ze-Yan and Ngo, Tony and Iismaa, Siiri and Dos Remedios, Cristobal G and Feneley, Michael P and Allen, Andrew M and Graham, Robert M and Smith, Nicola J (2018) Orphan receptor GPR37L1 contributes to the sexual dimorphism of central cardiovascular control. Biology of Sex Differences, 9 (1). p. 14. ISSN 2042-6410 (OA)

Szot, Justin O and Cuny, Hartmut and Blue, Gillian M and Humphreys, David T and Ip, Eddie and Harrison, Katrina and Sholler, Gary F and Giannoulatou, Eleni and Leo, Paul J and Duncan, Emma L and Sparrow, Duncan B and Ho, Joshua W K and Graham, Robert M and Pachter, Nicholas S and Chapman, Gavin and Winlaw, David S and Dunwoodie, Sally L (2018) A Screening Approach to Identify Clinically Actionable Variants Causing Congenital Heart Disease in Exome Data. Circulation: Genomic and Precision Medicine, 11 (3). pp. e001978. ISSN (Not OA)

Shi, Hongjun and Enriquez, Annabelle and Rapadas, Melissa and Martin, Ella M M A and Wang, Roni and Moreau, Julie and Lim, Chai K and Szot, Justin O and Ip, Eddie and Hughes, James N and Sugimoto, Kotaro and Humphreys, David T and McInerney-Leo, Aideen M and Leo, Paul J and Maghzal, Ghassan J and Halliday, Jake and Smith, Janine and Colley, Alison and Mark, Paul R and Collins, Felicity and Sillence, David O and Winlaw, David S and Ho, Joshua W K and Guillemin, Gilles J and Brown, Matthew A and Kikuchi, Kazu and Thomas, Paul Q and Stocker, Roland and Giannoulatou, Eleni and Chapman, Gavin and Duncan, Emma L and Sparrow, Duncan B and Dunwoodie, Sally L (2017) NAD Deficiency, Congenital Malformations, and Niacin Supplementation. The New England Journal of Medicine, 377 (6). pp.544-552. ISSN 1533-4406 (OA)

Muthiah, Kavitha and Humphreys, David T and Robson, Desiree and Dhital, Kumud and Spratt, Phillip and Jansz, Paul and Macdonald, Peter S and Hayward, Christopher S (2017) Longitudinal structural, functional, and cellular myocardial alterations with chronic centrifugal continuous-flow left ventricular assist device support. The Journal of Heart and Lung Transplantation, 36 (7). pp.722-731. ISSN 1557-3117 (OA)

Cropley, Jennifer E and Eaton, Sally A and Aiken, Alastair and Young, Paul E and Giannoulatou, Eleni and Ho, Joshua W K and Buckland, Michael E and Keam, Simon P and Hutvagner, Gyorgy and Humphreys, David T and Langley, Katherine G and Henstridge, Darren C and Martin, David I K and Febbraio, Mark A and Suter, Catherine M (2016) Male-lineage transmission of an acquired metabolic phenotype induced by grand-paternal obesity. Molecular Metabolism, 5 (8). pp.699-708. ISSN 2212-8778 (OA)

Soetanto, Rina and Hynes, Carly J and Patel, Hardip R and Humphreys, David T and Evers, Maurits and Duan, Guowen and Parker, Brian J and Archer, Stuart K and Clancy, Jennifer L and Graham, Robert M and Beilharz, Traude H and Smith, Nicola J and Preiss, Thomas (2016) Role of miRNAs and alternative mRNA 3'-end cleavage and polyadenylation of their mRNA targets in cardiomyocyte hypertrophy. Biochimica et Biophysica Acta, 1859 (5). pp.744-756. ISSN 0006-3002 (PP OA)

Lie, Shervi and Morrison, Janna L and Williams-Wyss, Olivia and Suter, Catherine M and Humphreys, David T and Ozanne, Susan E and Zhang, Song and MacLaughlin, Severence M and Kleemann, David O and Walker, Simon K and Roberts, Claire T and McMillen, I Caroline (2016) Impact of maternal undernutrition around the time of conception on factors regulating hepatic lipid metabolism and microRNAs in singleton and twin fetuses. American Journal of Physiology. Endocrinology and Metabolism, 310 (2). pp. E148-59. ISSN 1522-1555 (PMC OA)

Lie, Shervi and Morrison, Janna L and Williams-Wyss, Olivia and Suter, Catherine M and Humphreys, David T and Ozanne, Susan E and Zhang, Song and MacLaughlin, Severence M and Kleemann, David O and Walker, Simon K and Roberts, Claire T and McMillen, I Caroline (2015) Impact of periconceptional and preimplantation undernutrition on factors regulating myogenesis and protein synthesis in muscle of singleton and twin fetal sheep. Physiological Reports, 3 (8). pp. e12495. ISSN 2051-817X (OA)

Djordjevic, Djordje and Deshpande, Vinita and Szczesnik, Tomasz and Yang, Andrian and Humphreys, David T and Giannoulatou, Eleni and Ho, Joshua W K (2015) Decoding the complex genetic causes of heart diseases using systems biology. Biophys Rev, 7. pp.141-159. ISSN (PP OA)

Keam, Simon P and Young, Paul E and McCorkindale, Alexandra L and Dang, Thurston H Y and Clancy, Jennifer L and Humphreys, David T and Preiss, Thomas and Hutvagner, Gyorgy and Martin, David I K and Cropley, Jennifer E and Suter, Catherine M (2014) The human Piwi protein Hiwi2 associates with tRNA-derived piRNAs in somatic cells. Nucleic Acids Research, 42 (14). pp.8984-95. ISSN 1362-4962 (OA)

Lie, Shervi and Morrison, Janna L and Williams-Wyss, Olivia and Suter, Catherine M and Humphreys, David T and Ozanne, Susan E and Zhang, Song and MacLaughlin, Severence M and Kleemann, David O and Walker, Simon K and Roberts, Claire T and McMillen, I Caroline (2014) Impact of embryo number and maternal undernutrition around the time of conception on insulin signaling and gluconeogenic factors and microRNAs in the liver of fetal sheep. American Journal of Physiology - Endocrinology and metabolism, 306 (9). pp. E1013-24. ISSN 1522-1555 (PMC OA)

Liang, Bo and Soka, Magdalena and Christensen, Alex Horby and Olesen, Morten S and Larsen, Anders P and Knop, Filip K and Wang, Fan and Nielsen, Jonas B and Andersen, Martin N and Humphreys, David T and Mann, Stefan A and Huttner, Inken G and Vandenberg, Jamie I and Svendsen, Jesper H and Haunsø, Stig and Preiss, Thomas and Seebohm, Guiscard and Olesen, Søren-Peter and Schmitt, Nicole and Fatkin, Diane (2014) Genetic variation in the two-pore domain potassium channel, TASK-1, may contribute to an atrial substrate for arrhythmogenesis. Journal of Molecular and Cellular Cardiology, 67. pp.69-76. ISSN 1095-8584 (PP OA)

Lie, Shervi and Morrison, Janna L and Williams-Wyss, Olivia and Suter, Catherine M and Humphreys, David T and Ozanne, Susan E and Zhang, Song and Maclaughlin, Severence M and Kleemann, David O and Walker, Simon K and Roberts, Claire T and McMillen, I Caroline (2014) Periconceptional undernutrition programs changes in insulin-signaling molecules and microRNAs in skeletal muscle in singleton and twin fetal sheep. Biology of Reproduction, 90 (1). p. 5. ISSN 1529-7268 (OA)

Keam, Simon P and Sobala, Andrew and Humphreys, David T and Suter, Catherine M and Hutvagner, Gyorgy (2014) Computational analysis, biochemical purification, and detection of tRNA-derived small RNA fragments. Methods in Molecular Biology, 1173. pp.157-67. ISSN 1940-6029 (Book Chapter)

Giannoulatou, Eleni and Park, Shin-Ho and Humphreys, David T and Ho, Joshua W K (2014) Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie. BMC Bioinformatics, 15 Sup. pp. S15. ISSN 1471-2105 (PMC OA)

Li, Cheryl C Y and Eaton, Sally A and Young, Paul E and Lee, Maggie and Shuttleworth, Rupert and Humphreys, David T and Grau, Georges E and Combes, Valery and Bebawy, Mary and Gong, Joyce and Brammah, Susan and Buckland, Michael E and Suter, Catherine M (2013) Glioma microvesicles carry selectively packaged coding and non-coding RNAs which alter gene expression in recipient cells. RNA biology, 10 (8). pp.1333-44. ISSN 1555-8584 (PMC OA)

Humphreys, David T and Suter, Catherine M (2013) miRspring: a compact standalone research tool for analyzing miRNA-seq data. Nucleic acids research, 41 (15). pp. e147. ISSN 1362-4962 (PMC OA)

Samaraweera, S E and O'Keefe, L V and van Eyk, C L and Lawlor, K T and Humphreys, David T and Suter, Catherine M and Richards, R I (2013) Modeling and analysis of repeat RNA toxicity in Drosophila. Methods in Molecular Biology, 1017. pp.173-92. ISSN 1940-6029 (Book Chapter)

Ohanian, Monique and Humphreys, David T and Anderson, Elizabeth and Preiss, Thomas and Fatkin, Diane (2013) A heterozygous variant in the human cardiac miR-133 gene, MIR133A2, alters miRNA duplex processing and strand abundance. BMC genetics, 14. p. 18. ISSN 1471-2156 (PMC OA)

Castello, Alfredo and Fischer, Bernd and Eichelbaum, Katrin and Horos, Rastislav and Beckmann, Benedikt M and Strein, Claudia and Davey, Norman E and Humphreys, David T and Preiss, Thomas and Steinmetz, Lars M and Krijgsveld, Jeroen and Hentze, Matthias W (2012) Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell, 149 (6). pp.1393-406. ISSN 1097-4172 (OA)

Squires, Jeffrey E and Patel, Hardip R and Nousch, Marco and Sibbritt, Tennille and Humphreys, David T and Parker, Brian J and Suter, Catherine M and Preiss, Thomas (2012) Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA. Nucleic acids research, 40 (11). pp.5023-33. ISSN 1362-4962 (PMC OA)

Humphreys, David T and Hynes, Carly J and Patel, Hardip R and Wei, Grace H and Cannon, Leah and Fatkin, Diane and Suter, Catherine M and Clancy, Jennifer L and Preiss, Thomas (2012) Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function. PloS one, 7 (2). pp. e30933. ISSN 1932-6203 (Gold OA)

Schonrock, Nicole and Humphreys, David T and Preiss, Thomas and Götz, Jürgen (2012) Target gene repression mediated by miRNAs miR-181c and miR-9 both of which are down-regulated by amyloid-β. Journal of Molecular Neuroscience, 46 (2). pp.324-35. ISSN 1559-1166 (Not OA)