Combining polygenic and clinical risk scores in atrial fibrillation risk prediction: Implications for population screening

Segan, Louise and Ho Ho, William Wing and Crowley, Rose and William, Jeremy and Cho, Kenneth and Prabh, Sandeep and Chieng, David and Sugumar, Hariharan and Voskoboinik, Aleksandr and Ling, Liang-Han and Kalman, Jonathan M. and Abrams, Dominic and Fatkin, Diane and Takeuchi, Fumihiko and Kistler, Peter M. (2025) Combining polygenic and clinical risk scores in atrial fibrillation risk prediction: Implications for population screening. Heart Rhythm, 22 (8). pp.1906-1914. ISSN 15475271

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Link to published document: https://doi.org/10.1016/j.hrthm.2025.04.032

Abstract

BACKGROUND: Atrial fibrillation (AF) development is determined by clinical risk factors and genetic predisposition. Few studies have explored whether incorporating polygenic risk scores (PRS) improves clinical-risk prediction beyond existing models. OBJECTIVES: We evaluated the interaction between AF-PRS and the hypertension, age, raised body mass index, male sex, sleep apnea, and smoking-AF (HARMS(2)-AF) and Cohorts for Heart and Aging Research in Genetic Epidemiology for AF (CHARGE-AF) clinical-risk scores on incident AF risk among the United Kingdom Biobank. METHODS: AF-PRS was examined in those with and without incident AF based on International Classification of Diseases, Tenth Revision coding and divided into tertiles defined as low, intermediate, and high-risk categories. Regression analysis examined the impact of AF-PRS combined with the HARMS(2)-AF and CHARGE-AF risk scores and AF risk. RESULTS: Among 285,734 participants with available whole genome sequencing data (52% women, age 57 years [50-63], 84.6% Caucasian), AF incidence was 6.6% with a median time to AF 8.5 (5.0-11.2) over a median 12.9 years follow-up. High AF-PRS tertile was independently associated with incident AF risk, after adjustment for clinical-risk factors (hazard ratio 2.75, 95% confidence interval 2.62-2.89, P<.001). AF-PRS enhanced AF risk prediction when combined with the HARMS(2)-AF risk model area under curve (AUC) 0.828 improved to 0.839 with the addition of AF-PRS (DeLong P<.001) with overall net reclassification index of 13.5% (12.8%-14.1%), and the CHARGE-AF risk model (AUC 0.808 improved to 0.828 with the addition of AF-PRS (DeLong P<.001) with overall net reclassification index of 7.3% (6.7%-7.9%). CONCLUSIONS: Combining genetic and clinical risk using the HARMS(2)-AF and CHARGE-AF risk scores significantly improved AF risk prediction. Incorporating polygenic to clinical-risk scores may enhance population screening and promote targeted interventions to reduce the incidence of AF.

Item Type: Article
Subjects: R Medicine > R Medicine (General)
Depositing User: Repository Administrator
Date Deposited: 04 Dec 2025 04:33
Last Modified: 04 Dec 2025 04:33
URI: http://eprints.victorchang.edu.au/id/eprint/1766

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